Everything in RNA-seq got faster and more efficient, except the Interpretation.
FASTQ to counts to volcano plot — that part is solved. But your question was never "which genes changed." It was whether the change is real, what it means, and what to do next. Decisions that cost years and hundreds of millions, are built on interpreting molecular data, with RNA-seq at the center.
Addressing that takes reasoning a pipeline can't do: separating biology from artifact, reading the signal standard analysis skips, and grounding every conclusion in the literature — across your own data or the public datasets that can answer the same question.
That reasoning layer is AviCella.
Batch effects read as real biology
DEGs driven by a single outlier
Fusions the pipeline never tests for
Isoform switches collapsed into gene counts
Pathways flagged without biological context